##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane2_Index13_1.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	21035017	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	32.13712534674919	33.0	31.0	34.0	31.0	34.0
2	32.383461634473605	34.0	31.0	34.0	31.0	34.0
3	32.40255070865881	34.0	31.0	34.0	30.0	34.0
4	36.052948756827725	37.0	35.0	37.0	35.0	37.0
5	35.94053767581933	37.0	35.0	37.0	35.0	37.0
6	35.915791415809174	37.0	35.0	37.0	35.0	37.0
7	35.863547768941665	37.0	35.0	37.0	35.0	37.0
8	35.86048596965717	37.0	35.0	37.0	35.0	37.0
9	37.570286489428554	39.0	37.0	39.0	35.0	39.0
10-14	37.734072503958515	39.2	37.2	39.4	34.2	39.4
15-19	38.80637500792132	40.0	38.0	41.0	34.8	41.0
20-24	38.66660729582486	40.0	38.0	41.0	34.0	41.0
25-29	38.43293491990047	40.0	38.0	41.0	34.0	41.0
30-34	38.12851235632469	40.0	37.8	41.0	33.0	41.0
35-39	37.82600782305049	40.0	37.0	41.0	33.0	41.0
40-44	37.611707278392025	39.8	36.6	41.0	32.2	41.0
45-49	37.18132011968423	39.0	35.6	41.0	31.0	41.0
50-54	36.84645443357617	39.0	35.0	40.6	31.0	41.0
55-59	36.6028198788715	38.4	35.0	40.4	31.0	41.0
60-64	35.89888726022898	37.2	34.4	40.0	30.0	41.0
65-69	35.12951634885771	35.8	34.0	39.2	29.2	41.0
70-74	34.27911401260099	35.0	33.4	37.8	28.8	40.2
75-79	33.15519692710493	34.8	32.4	36.2	27.4	39.0
80-84	32.850580905163994	35.0	33.0	35.4	27.4	37.2
85-89	32.04319767366958	35.0	32.6	35.0	26.4	36.2
90	31.55812686055828	35.0	32.0	35.0	25.0	36.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
10	1.0
11	12.0
12	110.0
13	812.0
14	3632.0
15	9156.0
16	15374.0
17	20791.0
18	26300.0
19	32564.0
20	39919.0
21	47426.0
22	55512.0
23	66798.0
24	83656.0
25	109011.0
26	145406.0
27	192794.0
28	256504.0
29	331756.0
30	424146.0
31	536025.0
32	679767.0
33	880998.0
34	1194204.0
35	1719149.0
36	2692021.0
37	4029785.0
38	4646175.0
39	2723323.0
40	71890.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	27.78755580424537	12.95679548600621	10.361928805900492	48.89371990384793
2	22.685363173226815	19.570100656443493	35.21264565652597	22.53189051380372
3	25.926154468998053	21.885653812402435	22.844854368313563	29.343337350285953
4	27.984859722243154	28.528724269630967	19.291726743077984	24.1946892650479
5	29.29464711152836	30.43078120640454	21.12096225070795	19.153609431359147
6	23.89822646684811	33.298603942178886	21.617177680436388	21.185991910536607
7	21.29427734558014	18.827604400335506	37.67531863268165	22.2027996214027
8	21.463557647707155	22.029300000090327	29.212921482307337	27.294220869895184
9	21.721274982092613	20.929066595317614	31.432666446933645	25.916991975656128
10-14	24.670673516468757	26.321833947158126	24.636712349054623	24.3707801873185
15-19	25.04190021658595	25.15517346852253	25.08575194489893	24.71717436999259
20-24	24.82249484601267	25.398310457228146	25.393441356502365	24.38575334025682
25-29	24.72133887297181	25.40749015361617	25.324175750044276	24.546995223367745
30-34	24.764492434791457	25.31982215688756	25.283796878892534	24.63188852942845
35-39	24.7669689528695	25.45216231699403	25.231567712505615	24.549301017630853
40-44	24.74201171945495	25.297454316591867	25.387631836641894	24.572902127311288
45-49	24.654715098387612	25.338252179100458	25.329710984437483	24.677321738074447
50-54	24.696753926689624	25.428379927626864	25.341081174528874	24.533784971154635
55-59	24.707788208556433	25.338719819568112	25.320632703906842	24.63285926796861
60-64	24.614564103484675	25.374844450165305	25.43217869374469	24.57841275260533
65-69	24.621599484986916	25.483714711747886	25.41640866761206	24.478277135653137
70-74	24.64787174877514	25.430543787483046	25.33444246657363	24.58714199716818
75-79	24.66001188096964	25.36943952869225	25.439425966496383	24.53112262384173
80-84	24.571870527093225	25.491568404488312	25.45323339735401	24.483327671064455
85-89	24.663717870240134	25.480146084018614	25.38093585890937	24.475200186831884
90	24.36166715514395	25.5818287401018	25.583530685287275	24.472973419466975
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	76.6812757080933
2	45.217253687030535
3	55.26949181928401
4	52.17954898729105
5	48.448256542887506
6	45.08421837738472
7	43.49707696698284
8	48.75777851760234
9	47.63826695774874
10-14	49.041453703787255
15-19	49.75907458657854
20-24	49.208248186269486
25-29	49.26833409633956
30-34	49.39638096421991
35-39	49.31626997050035
40-44	49.31491384676624
45-49	49.33203683646206
50-54	49.230538897844255
55-59	49.34064747652505
60-64	49.192976856090006
65-69	49.09987662064005
70-74	49.23501374594332
75-79	49.191134504811366
80-84	49.055198198157676
85-89	49.13891805707202
90	48.83464057461092
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	2.0
1	1.5
2	1.0
3	2.0
4	4.0
5	9.5
6	17.0
7	19.0
8	27.0
9	41.0
10	46.0
11	70.5
12	126.0
13	218.0
14	355.0
15	616.0
16	1130.0
17	1895.5
18	3180.0
19	5658.0
20	7288.0
21	9981.0
22	16864.0
23	27343.0
24	41897.5
25	61746.5
26	87376.0
27	119108.5
28	153867.0
29	191473.5
30	212008.0
31	230284.0
32	270167.5
33	317050.0
34	368440.5
35	417924.0
36	467418.5
37	524213.5
38	573751.5
39	614118.5
40	635616.0
41	649578.0
42	677035.0
43	703554.5
44	720175.0
45	727094.5
46	728515.0
47	725691.5
48	726141.5
49	727220.5
50	726929.0
51	719624.5
52	711614.0
53	700016.0
54	693060.5
55	694088.5
56	682916.5
57	665852.5
58	644362.5
59	616510.5
60	601348.0
61	583592.0
62	546660.5
63	502691.5
64	450749.0
65	396688.0
66	345208.0
67	292082.0
68	240718.0
69	193709.0
70	169506.0
71	148455.5
72	110905.5
73	80312.0
74	53872.0
75	32763.0
76	18867.5
77	10111.5
78	4672.0
79	1984.0
80	1112.0
81	765.5
82	329.0
83	182.5
84	99.5
85	57.5
86	32.5
87	20.0
88	15.0
89	12.0
90	11.0
91	8.0
92	4.0
93	1.5
94	0.0
95	0.0
96	0.0
97	0.5
98	0.5
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.4094030444567741
2	0.0
3	0.0
4	0.0
5	0.0
6	0.0
7	0.0025196081372313604
8	0.0
9	0.0019015910469670644
10-14	0.0019225085484837023
15-19	2.0061785545502533E-4
20-24	0.0015783205689826635
25-29	0.0011352498550393376
30-34	0.0016277619362038073
35-39	0.004121698594301113
40-44	0.003461846501003541
45-49	0.002323744259393753
50-54	0.002763962586766628
55-59	7.321125530823199E-4
60-64	5.628709499022511E-4
65-69	2.6717354209887257E-4
70-74	0.005585923700465752
75-79	0.0017599225139680182
80-84	0.0021735185666833545
85-89	0.0023370553967225222
90	0.0012455421357634273
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.1035017E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	54.183240202045376
#Duplication Level	Relative count
1	100.0
2	30.663988954437052
3	16.002468515961674
4	9.989121794067193
5	6.856407681686958
6	4.956905568804652
7	3.8910505836575875
8	3.0636793439605037
9	2.4800217564118654
10++	31.292623739592486
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
CCTGG	4406155	2.5711532	5.856307	1
GAAGA	4468350	2.525295	5.258641	2
CTTCT	4526790	2.5145352	5.2423515	1
AAGAA	4503035	2.4927268	5.224858	2
CTGGA	4209270	2.4125195	8.377246	1
TCCAG	4077375	2.3305223	5.020314	2
CTCCT	4060890	2.305672	6.4062543	1
CTGGG	3809985	2.2293735	7.8490577	1
CAGGA	3846975	2.2135446	5.553557	1
CTTCA	3926700	2.1897771	5.4343824	1
CTCCA	3779350	2.1542609	6.949935	1
CCCAG	3667455	2.1426258	6.6007094	1
CAGAA	3661975	2.0639007	5.0560074	1
CTCTG	3528500	2.0088978	5.9113903	1
CTGGC	3244090	1.8930454	5.050929	1
TGGAA	3272315	1.842108	5.16688	2
CTGAA	3253595	1.8265518	5.2157855	1
CTCAG	3023255	1.7280145	5.918356	1
CTTGG	2856615	1.6308382	5.265389	1
>>END_MODULE
